NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1026612

Scaffold Ga0114336_1026612


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1026612 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6910
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002071Metagenome / Metatranscriptome596Y
F002245Metagenome / Metatranscriptome578Y
F003690Metagenome / Metatranscriptome473Y
F019325Metagenome / Metatranscriptome230Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0114336_102661214F002245AGGMSNLVKVPHTVVFEAVIDLDKIPANLLPALIALDEATMTEMCKGATLHALSMSNTLEVANNGNYWAELTVKEGN*
Ga0114336_102661216F002071AGGAMTNATLEVGQTYTTTTSGITGIIKAVDNHPSGVNRILLDVNGKERWTSTPNN*
Ga0114336_10266124F019325AGGAGMTQLTETLYSTIVHDFHNGGVKSSYGLDTYTRKAILKALLSSKGCECINCLTKEVK*
Ga0114336_10266125F024319AGGAGGMTNRIWESRNDYQTNSDYVACSSGCGRVTAWTLCVMCGGEYATHALVNVR*
Ga0114336_10266126F003690GGAGMIPNGFELHITNEYGFELDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK*
Ga0114336_10266128F000447AGGMGYIEIFRLDEEGAGWVDLSEATPDEMLTLEIGLFQEGAL*
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