Scaffold Ga0114336

Basic Information
Taxon OID	3300008261 Open in IMG/M
Scaffold ID	Ga0114336_1040031 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5339
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5339

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

5.7

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F021287	Metagenome / Metatranscriptome	219	Y
F094883	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10400312	F094883	AGGA	MAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAKEQQQAIQQNIASLEPATELAKKTTAAEQSQLESQLRRAIPGYDQLVSQAGQNIAASLRGEISPEVSAQVQRSTAGRALSGGFGAGSGFGRALTARDLGLTGMQIQNQGLAQAQNFIQQQRAFGMVQPFSVSSMFITPAQRIGAIQEQQARMYGRDLTAAQVAAAPSPMQQAAQTALTNFGGVAGGALSQYGMYQGLMAQNPANLYSTPPSGSPYAGAGATTGSDMSITGIIPEVG*
Ga0114336_10400313	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLIDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFIELTGVIRQATNTVSRLYEFNATTSLETDLAVYDPDETLPQYRRSLLTDRCQNDEDRPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF*
Ga0114336_10400314	F021287	GGA	MPNLTLITLTPPSLPVGYCPLNYQTLANDIISGTQATFNSSIGNSFFNFGPSTPALNNQVYPWLDEDGNWWVFNGGYWNRKNPVPPGTFERRIFIGTTNDLLSYDGGDGTSNPPTNYTGAMWEVDTAFQARFPVGAGTFAASGVVTVNGTTTSTAIVGEDQHLLTTAEMHNNLPPFYGVYFIKRSARVYYTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114336_1040031

Overview

Ecosystem & Geography

Associated Families

Sequences