NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114337_1008322

Scaffold Ga0114337_1008322


Overview

Basic Information
Taxon OID3300008262 Open in IMG/M
Scaffold IDGa0114337_1008322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10728
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F009318Metagenome / Metatranscriptome319Y
F024098Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0114337_100832220F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGYFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ*
Ga0114337_100832223F024098N/AMSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPTLTQTGFADHSGFYSGYRLDFTQEYGNTPVVTGATTIVSGVMAFAGNLEQLELAGWSGSLYFPSGTFEDLVTRSLATNVRRTVYSDSYGWLAQGVGSGFTNPQNTDAQITYYTAGGALVRFYNVSIGSASGSTIFRFGAGPLNITALTSGQCSDGFAGSVNFPTAEGAYYTISFLDDNGNATVPFTYVIGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFV
Ga0114337_10083224F009318AGGMWVGCLYLWTMRRLLLLLLLTACTNNRPWKVIEVRTKGDACEYVLSRSNGFGPQVKNITAKCGKYTLFQTINPNP*
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