NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114337_1082663

Scaffold Ga0114337_1082663


Overview

Basic Information
Taxon OID3300008262 Open in IMG/M
Scaffold IDGa0114337_1082663 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y

Sequences

Protein IDFamilyRBSSequence
Ga0114337_10826631F002162N/AMPNYDYMCDGEGLVILLDLPMDHKIPHCQVCNAPLRRVFTAVPTIFRGTGWA
Ga0114337_10826633F002357GGAGGMAFKLDDYEDVATLNKWFISNYPMGRSDLSVISHDPEKGYILIQATIWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATRDDMQKVESNPSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKEPEPVAWSVGEVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPPNWATLTANGKWYFKGGE*
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