Scaffold Ga0114353_1029029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114353_1029029

Scaffold Ga0114353_1029029

Overview

Basic Information
Taxon OID	3300008264 Open in IMG/M
Scaffold ID	Ga0114353_1029029 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-53-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3166
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067400	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114353_10290292	F067400	AGGTGG	MALAPQEAKFVLNWQVSILNAVRDCDLTLVRCVRMIVRIVMPNTSPTLDLAEHAKQLEISPEDKEALVTWIRLLDEVSREGNRELCLRLQQVCEEVLHSQGYSNVMMHGVWNGSSGSSNRRSVITCADASQQRAATQGAPHQPPVLETPSVEGPDHSESPPPEYFIRDETGAVVAIRLWYGQRTVISHTLWRKMKAMWPVLSRTRDGKPYEEEREPWYSTAEAVLQTIGNGVFTLDDLLEYLEECSPTDGQRALFRQFIAEDGGQTEVMVSLLESIQETVEKRV*

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