Basic Information | |
---|---|
Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1002907 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9370 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (52.63%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012771 | Metagenome / Metatranscriptome | 277 | Y |
F050368 | Metagenome | 145 | N |
F078377 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114363_10029073 | F078377 | N/A | MSIVTIQLPTEPSYWGSTATEADVYRIIGNLEMMIRSQFPDVDIDFQHMPEPRGRGIWGDDECLMDSIHQFIQDNWTSAL* |
Ga0114363_10029076 | F050368 | N/A | METQDMINEEEVRRLPLWKDWIDRNEHRLAYGLTVTIEEMEAALEEKANSMAFQMAAHNIRVLLRQRGMNFSQRGLRGAGFQILPPNTNADEMEHLNRVALNSLKASVILGTKTNLNLLSDCERKRHESVTEKMAHRLALLGRSNAGLGQEIAKQITQ* |
Ga0114363_10029079 | F012771 | GGAGG | VTKAKRPAEKVFIVSADTHRRLKDYATKKGYKLQFVADEAVSEYLKRKEQQ* |
⦗Top⦘ |