Scaffold Ga0114363_1007479

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114363_1007479

Scaffold Ga0114363_1007479

Overview

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1007479 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5380
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002794	Metagenome / Metatranscriptome	529	Y
F007579	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100747911	F002794	N/A	MECEVSEGVSFNQGELTEETRKMVLESSASASHTMAIFNLMDDIMAISKNPHASIIRRLRAMKNDLSLNDPMPLHDVTTLDQAIKALEAHS*
Ga0114363_10074794	F007579	GGAG	MATKAEIDSQIGNATRELAPGTTWKYNPPGDGYYCLEWMDDPALQPTEAATMLKATELANNPTPIG*
Ga0114363_10074798	F001872	GAG	MNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPKASRKQALIFIDKLVANANDLGLQCILDYVAPHGRGWRCDRQAWETYTKETIHGVPGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA*

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