Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1008919 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4843 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009265 | Metagenome / Metatranscriptome | 320 | Y |
F009526 | Metagenome / Metatranscriptome | 316 | N |
F009679 | Metagenome / Metatranscriptome | 314 | Y |
F009746 | Metagenome / Metatranscriptome | 313 | N |
F029096 | Metagenome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_10089191 | F029096 | GAG | MVMAEGRTTITVRPDLADYRGLLKALNVMDKEAQYELKNEVYAISSWTAKGIQQAGFAHPIYPRQASIVAASVKPSRDRVPTVRVGGSRGRVSGGANAGQLLFGNEFGGDRNTYGNLNAFPNGGYRFPARTAREGRGNTGYWIFPTLKAMQPEIKKRWFAACNKVMDSWARYS* |
Ga0114363_10089192 | F009265 | AGG | MQYDIKTKQGNNYIVSDESTWLWIEIERDLGYTVTQAAEKMSQGSLDVITCMLYKAAKAAGHTKLPSQQAWVTNEFEGFEVVEESPKES* |
Ga0114363_10089193 | F009526 | GAG | MPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAASSAPDTSLPFSFDVNGDTFTGNVFPVFPTVGGAATDVLTTSLSFIVEDGTVARA* |
Ga0114363_10089194 | F009746 | GAGG | LADLATYRSTLAGTLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITCIVNAADNQAALKNLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN* |
Ga0114363_10089195 | F009679 | AGGA | MPLIALSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAINGVSLTNNVARFYCYDNTFVVGQALTVTNCGSPFNGSRTVTKEGVDEYGVTFFEAAITNADITKRKIIPNGRAVLTSQAALYDTIPEVRESALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG* |
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