NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1025908

Scaffold Ga0114363_1025908


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1025908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2523
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017130Metagenome / Metatranscriptome242Y
F034923Metagenome173N
F063695Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0114363_10259082F063695AGGMKITAKDFDNLTDTVMGWKGNDWELQAERFADKCQGDWAVICWYDSLIAMIMARTFLEQNHHAFQESYDHNIESWVLLTNYDSFDVAVSA*
Ga0114363_10259083F034923GGCGGMSNNDKLLIICLIGASISLIVLAVQSYKEAYDRGHRDGWHKGRAVNRSEFWQE*
Ga0114363_10259086F017130GAGGMGYAELHTADGWVNVEDIPMIETVICQLCNEPTEAKDITITARIVEGVVVAGTWSCNKCKAVNG*
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