Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1033083 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2166 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003662 | Metagenome / Metatranscriptome | 474 | Y |
F011843 | Metagenome | 286 | Y |
F035676 | Metagenome | 171 | Y |
F052461 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114363_10330833 | F035676 | AGG | MSGEKMKSNFVNNHVRLNGNVHGHRLKLCNKCEEMKPPEGGVQMSAARWICASCWTDRETGKNLKQARMVK* |
Ga0114363_10330835 | F011843 | GGGGG | MKTQMLIKVRQLFNVEYVPRSTNRHNQLQYIKAIRLLGDKWLIHKDNKVQRLQ* |
Ga0114363_10330836 | F003662 | N/A | MKTKQATVVLDDQEWIVLDTDEVKDKKVFCTLMSPDGHITWHTWVDINKIVGVI* |
Ga0114363_10330839 | F052461 | N/A | EMKTKAGVVSSKQSAVGLQLNAKGYRSVVARSAADAIKTIEEYLNGNKEKREDFE* |
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