NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1003640

Scaffold Ga0114364_1003640


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1003640 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8339
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_10036403F092032AGGAGMSEVNEGVVCLYGIGLGQVASLYVQGYSVSSGFNNTGMVVDEQGVTRTARYDDRRSEITVDGVAKATSVPQLGASFSFTAKTASAYPGGSASVSFTGVVTKVDDRGSSKGFVTVSVTAESFEGISTY*
Ga0114364_10036404F001055N/AMPFTKSIRHIVEGTLATYLTSQAGLAGVVILTGDSAATQTLPKAVVLCDSARAPGDLQEGLGNYDCSVRVTLFSNADDTTLAVHRERCAALSDCMKSVGLIQAAFATGGDALCYDVTYRSEDEGIDERSWATSFAFDILTCLNPE*
Ga0114364_10036406F001298AGGMSLYAEFLPDAKEMIADFGVAGSANSGAITFKCLISDPAVQTVLEPGGYMERTQYSVRLPAATASWSLPDGSIGASSAIIVSGSPIPSLAQGKKIVAGGKNVRVTTQTYKPGSAWVTLVVIDDNQ*
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