NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114154_100082

Scaffold Ga0114154_100082


Overview

Basic Information
Taxon OID3300008269 Open in IMG/M
Scaffold IDGa0114154_100082 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98501
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (66.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076191Metagenome118N
F084362Metagenome112N
F103430Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114154_10008247F103430AGGAGMIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLSELKKVLDQEAIAYQIENDLQLI*
Ga0114154_10008280F076191AGGAMKITAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNEAGKDYGAVMYFTGKAAEQHIEENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPNNHYGFLRDAGY*
Ga0114154_10008285F084362N/AMNCTFTVRWSDEKNEPHAKTYATEDSAKRAKKWLLEHGVRSVDIAVKINNKPAGSLEDGDKPSETEAEQKGFWWEK*
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