Scaffold Ga0114250_103687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114250_103687

Scaffold Ga0114250_103687

Overview

Basic Information
Taxon OID	3300008273 Open in IMG/M
Scaffold ID	Ga0114250_103687 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 158883629 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5728
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114250_1036874	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTISYMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*

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