Basic Information | |
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Taxon OID | 3300008347 Open in IMG/M |
Scaffold ID | Ga0115411_1000032 Open in IMG/M |
Source Dataset Name | Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764892411 reassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 127501 |
Total Scaffold Genes | 116 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (12.07%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Source Dataset Sampling Location | ||||||||
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Location Name | National Institutes of Health, USA | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F080165 | Metagenome | 115 | N |
F090516 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115411_100003227 | F080165 | N/A | MKSIKILLLLLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEKDSLKYTFTRYILR* |
Ga0115411_100003248 | F090516 | N/A | MKSNLSVELFLVFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYKEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPMIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK* |
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