Scaffold Ga0114876

Basic Information
Taxon OID	3300008448 Open in IMG/M
Scaffold ID	Ga0114876_1002128 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14180
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14180

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F050308	Metagenome	145	Y
F059678	Metagenome	133	N
F061576	Metagenome	131	Y
F081233	Metagenome	114	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100212811	F050308	N/A	MFLILCSLAASCQVTKVDNGFLISREYAEYITARFDSLDAYKIAYGECVDRAVECDALLNKSERLILDLKKQQNIQSDMLLLKESIIKSHERDIMIYKDIEKQLNTEKRMKKMWKITTYAFITVSLSAITYSILK*
Ga0114876_10021282	F081233	N/A	MIYRPKIKVHSDDEINYWKHLINEKRRQNKTLQRWLVVSDVHRPFHNQILWQKLLRLVSEMGTNLHGLVLAGDYLDLYTLGSYNAESLANLSGLTLQDEYIDGLQGIDDINSAFKGAKKYFLFGNHEDRYFRHIKEKDNAKYGGALINPTEALYLHERGWEVKTDWQSDYFTLGKHLDIVHGIYTSIHAAKAHLDKTQHSVMFGHTHRVQCYHTGNKAAFNIGGLFDIKSKGFFYMPRFQRQLWANGFAIVNVTDNGDFYVEQVNVWADKFLANGKMY*
Ga0114876_10021283	F061576	N/A	MKESDWVRKLILSSNPDNIELGLIMNLTFNYYPLTAKFYKKNAKKKFWQPSRNYSVIETENRYYSWVALLNNELKTHRCYFWLDFKEPKFKTPWQAWQQHITSGAKWAYNGPLFNYPSHPYTSMFMR*
Ga0114876_10021285	F059678	N/A	MKTLLFLLLFSASAYAQTDTMYCIQILSTRHPEYIRAEHLAMCTLEQAMVEQTDSLYRIMFVYDTYEEAEIMLTTWKRAHKDAFICRRNKKQISNYYPFYTYD*
Ga0114876_10021288	F046994	N/A	MIFRKRNRAEQNESNYQKWLKTYIPETTKQRIELVRVFTDRADNNFYILKNPANLTRERAQRIEEAMTAIDFGINKTEVVEKLTGMLEIVEDMPWQNMTRDKLKEFHTKSKDQLNDILYRLKNVKIDDLLLEAGLYFFYIDGENPYIINSETQQRKLDAIKKDDELRAFFLNSIEQILKGSSALNV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114876_1002128

Overview

Ecosystem & Geography

Associated Families

Sequences