NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1012379

Scaffold Ga0114876_1012379


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1012379 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4780
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F020348Metagenome224N
F048948Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0114876_101237910F048948GAGGMRKLTAIWYIITHKAYFVAVCKTGFNGDEMTTIGNYTYSMADTLINKHITDIDNFLDQQDALDEANDIINGIL*
Ga0114876_10123792F011074N/AMQLVGLNVMPDKIKMSVLEDWIRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANQLRKMMPEEREQAIPHLTDLDIINYSYKEYKLLENRTFDKVFNPFSVFTKLNATGIKKWTKEDGAEAKKKLMEIITYKANRMDIISAKQYRDEWTEQWLKNQARAVAVALFFDLQIKNGKVSFS*
Ga0114876_10123796F020348GGAMEIEHCKYLDLHRANFEMVQNGYVRNIDLDILKMYEHIYRKYMNPDFILTVWCSHCIFDMVKRLYEWYDLQPKNK*
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