Scaffold Ga0114880

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1002057 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0114880_1002057 Open in IMG/M

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11641
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (38.46%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11641

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (38.46%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F082108	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100205713	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMQITYVEESYNEDGYTNTTAYPTTSIYRDVPNLETSIYIKWMNWATQVASEE*
Ga0114880_100205719	F025437	N/A	MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVMELSKYKELYLTLKRTFDEF*
Ga0114880_100205720	F010908	GAGG	MMQILSPFQKYECFAVDGVDYLVIDYTIIQDCDYNLVEWASEMKFKRLKDHKHYTMPISKIITNHQEGRAKLCKCK*
Ga0114880_100205721	F009202	GGAG	MLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL*
Ga0114880_100205723	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNSFGGGYTPSASSSAPKGNDERSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASAAPASHTEHFANRNDPF*
Ga0114880_100205725	F009600	N/A	MRLSHTRQLTYKVVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLAKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIGKDTAEITFSGILVNS*
Ga0114880_10020576	F082108	N/A	MLYIVTPCSRPQNLVRLKQHIPSYATWVVMMDANCDFKGATGASITHYSKRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPHDLPNLRFEMTYEADGTFAQAASEQGTLICVEQYLCYYNALK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114880_1002057

Overview

Ecosystem & Geography

Associated Families

Sequences