NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1004077

Scaffold Ga0114880_1004077


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1004077 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7925
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005529Metagenome / Metatranscriptome397Y
F008073Metagenome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_10040771F008073N/AMKGIILKHLQKMEFVCGLKQFKEYKEEDAIELLDCLNKLFTSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSGWINQYYTHHQSQIVQEVQAMNNKDQEPTNEEIEYWIEVGKQIFRDNYQYAKDHGFCKDLAEWGANWFNKFQEKGILKPWMYQVEEIENDVRRELRLTTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDQLI*
Ga0114880_10040775F005529N/AMPRMLPKSKLDYSLEIRYRLSSGEWSKWMNKGKGSFQSIDIVQRQIRTLAAEHYGRQKEIRFEWNGWLCDYSGQPTGEVISLK*
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