Scaffold Ga0115369_10021073

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115369_10021073

Scaffold Ga0115369_10021073

Overview

Basic Information
Taxon OID	3300008469 Open in IMG/M
Scaffold ID	Ga0115369_10021073 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - WM1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Aeronautics and Space Administration (NASA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2689
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Shallow-Sea Hydrothermal Vent, Milos, Greece

Source Dataset Sampling Location
Location Name	Milos, Greece
Coordinates	Lat. (^o)	36.674869	Long. (^o)	24.520916	Alt. (m)		Depth (m)	.01 to .2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004928	Metagenome / Metatranscriptome	418	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115369_100210732	F004928	GGA	LEVITMGQALHSIESEPDHTVEIVVHITETLGEQQRGNLIAAIEGNSGITTAEFCPLRYHLMLVRYDKDVSTSQDVLNCVESQNVDARLIGPV*

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