NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115369_10142598

Scaffold Ga0115369_10142598


Overview

Basic Information
Taxon OID3300008469 Open in IMG/M
Scaffold IDGa0115369_10142598 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - WM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Aeronautics and Space Administration (NASA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)896
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Shallow-Sea Hydrothermal Vent, Milos, Greece

Source Dataset Sampling Location
Location NameMilos, Greece
CoordinatesLat. (o)36.674869Long. (o)24.520916Alt. (m)Depth (m).01 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004052Metagenome / Metatranscriptome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0115369_101425981F004052GGAGMRILSEIVLIALTMLLLSCDQQHSASDIDPELGFECFESHRASLPPGTQYEGIEKLAENRLTIKIMNGVEVVTIDCGLNPDGTLQPAGE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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