NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115371_11069662

Scaffold Ga0115371_11069662


Overview

Basic Information
Taxon OID3300008470 Open in IMG/M
Scaffold IDGa0115371_11069662 Open in IMG/M
Source Dataset NameSediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5069
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location
Location NameAdelie Basin, Antarctica
CoordinatesLat. (o)-66.314Long. (o)140.425Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F032332Metagenome180Y
F064641Metagenome / Metatranscriptome128Y
F091005Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0115371_1106966210F091005N/AMASIKLIPGFESFNENDNTVDNLNSMANTDLERIADYADMIKDRMSQGQTLDAWMYSKISDSVKNLNSVHDTMDGNDGVTEAEKHEFNPNETAERLKRRETQNIERFRAAQDREDPFAVQYYQLRISLDKIDLQRLKIQTQIHGLKKKFKK*
Ga0115371_1106966212F064641N/AMDPQEDKDANAIRHYKGTIKQFKDMFDDLAGGKDTNAYDSPVRQGFDVHPTRDPGVISPHWEEGHEDEKTQNENHVTNFKNFK*
Ga0115371_110696624F032332N/AMESNHKNGFGDDFIRSLLLTLEQTDFDEFMNLSYVVMMQSPSAVLKRKDSIETKLQAIDGMVKYFEETEDFEKCTNLQKLKHMLFIDGPSDDDIIN*
Ga0115371_110696627F008425N/AMANKDITYKQFVTHMDKGNKVYMKKPKSWQKVWFWWESKREKWFLNKAFDKRTDGRVEPEPSVWITAKQMEGHMDHMTRMGFKYHIDE*
Ga0115371_110696628F024797N/AMGRKLIDGDIPNLVKVLERIAIQMERSNKLEEKKFLLEERIQKLTIKEANKNG*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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