Scaffold Ga0114860_100022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114860_100022

Scaffold Ga0114860_100022

Overview

Basic Information
Taxon OID	3300008504 Open in IMG/M
Scaffold ID	Ga0114860_100022 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	199339
Total Scaffold Genes	285 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	216 (75.79%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054109	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114860_10002242	F054109	AGGAGG	MVGRPKSKKGTKVHTAFKIYPVDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*

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