NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111034_1167039

Scaffold Ga0111034_1167039


Overview

Basic Information
Taxon OID3300008517 Open in IMG/M
Scaffold IDGa0111034_1167039 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65456
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (38.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102488Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0111034_116703928F102488N/AMLEEIDKSPEAAIIAVDEVFKTYELMCLDKLKEIGRSTAREWSFAMGYTHRSSLAKIIRRITERYPEMLKIYDNRFPRLYEAI*
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