Scaffold Ga0115652_1024738

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115652_1024738

Scaffold Ga0115652_1024738

Overview

Basic Information
Taxon OID	3300008624 Open in IMG/M
Scaffold ID	Ga0115652_1024738 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2364
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007667	Metagenome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_10247389	F007667	GGA	MNWYNQQNKMIHELNGTVFSNDPINKEMDPMSPIDVHNTNYVMELKNREAYTPDRFDGSLIEKMKYDFLMKNCGDKIPGYVCKFKDGSYWAWNLKKIPEPEWYDKMLPETTHFDRSGWINKKVGDLKLKDGTKLL*

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