NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115652_1132551

Scaffold Ga0115652_1132551


Overview

Basic Information
Taxon OID3300008624 Open in IMG/M
Scaffold IDGa0115652_1132551 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)679
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007697Metagenome346N

Sequences

Protein IDFamilyRBSSequence
Ga0115652_11325512F007697N/AFQIKFGMNGKQVMETIAKQVKNIPDCVETVVGIAGSGLSMLGVALGCKLYNKNVKTIHPVALSGYIDKNKKMWYDRLSPNDKFDGDFKVVQSEYPYQHKLKLNESLPLDQTYEAKAWDWMVKNLEPSEKVLFWDVGIKEYDLDYIEPIKWHKSEYEKIIDREVRRKSKVTKHDFF*
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