Scaffold Ga0115658_1054047

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115658_1054047

Scaffold Ga0115658_1054047

Overview

Basic Information
Taxon OID	3300008629 Open in IMG/M
Scaffold ID	Ga0115658_1054047 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2488
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017252	Metagenome	242	Y
F060453	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115658_10540471	F060453	N/A	EYLLSHSLFLECRMAFKLKTGKTINKVLAGAGIVALGTLVLNAVSPGLMQGSLGKVILPAVSYGVGGLESVAGAVVTEFAGHASGARSLDNTLTESL*
Ga0115658_10540473	F017252	AGGTGG	MPQVIQGYRVTTKPSDTTAESTYVADIVAAGAGATTVHYPAQYRSIAISLAIKNQDAANACTFSVNGQPAISLSAGADQNINNQSIVSVQVTPGAAGTVDLLAQVTPMYVTTEKERFDLARG*

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