NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103608_1005149

Scaffold Ga0103608_1005149


Overview

Basic Information
Taxon OID3300008644 Open in IMG/M
Scaffold IDGa0103608_1005149 Open in IMG/M
Source Dataset NameMicrobial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-50
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Microbial Communities From Hydrothermal Vents In Mid Cayman Rise, Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010686Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0103608_10051491F010686N/ATGGTGRGRNHCGQATKGVWGMSWRQKAMKGAEGCEKPGEAVKRALIPGFLNYVALNT*
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