NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103953_1008482

Scaffold Ga0103953_1008482


Overview

Basic Information
Taxon OID3300008687 Open in IMG/M
Scaffold IDGa0103953_1008482 Open in IMG/M
Source Dataset NameEukaryotic communities of Beech Litter from forest soil in Germany - LitterTranscript_20121
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMYCOBT
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Forest Soil → Eukaryotic Communities Of Beech Litter From Forest Soil In Germany

Source Dataset Sampling Location
Location NameGermany: Rauhenebrach, Bavaria
CoordinatesLat. (o)49.926Long. (o)10.569Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047473Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0103953_10084822F047473N/AMKLILLSLLIWTLVVGNPSYVVDLPKEKWPQGYDGKSPLYTGTATTWCGAASGNMCGLGTLCDQGKLFCGALSDAAFPDLISCKCDSYCSNCGLTECCNNQAPSCDTKFCKAGWCVACNDDKCFNKATFNVTLADACPKYHPNNVNNCCSHNKDPGWCECVSSSVPPNIDLNCAGFSHMASTSTGQVNAYLWAC*

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