Scaffold Ga0103953_1008501

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103953_1008501

Scaffold Ga0103953_1008501

Overview

Basic Information
Taxon OID	3300008687 Open in IMG/M
Scaffold ID	Ga0103953_1008501 Open in IMG/M
Source Dataset Name	Eukaryotic communities of Beech Litter from forest soil in Germany - LitterTranscript_20121
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	MYCOBT
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	747
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Filasterea → Capsaspora → Capsaspora owczarzaki → Capsaspora owczarzaki ATCC 30864	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Forest Soil → Eukaryotic Communities Of Beech Litter From Forest Soil In Germany

Source Dataset Sampling Location
Location Name	Germany: Rauhenebrach, Bavaria
Coordinates	Lat. (^o)	49.926	Long. (^o)	10.569	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083663	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103953_10085011	F083663	N/A	MTFNWLVVLLVLFTYVNCHQLADPVKPEWPDQFVATFGLNIKTSGIKNESSMFYSNWQIQAQLVVYPTACIPFNDAAVKQACNIWFLPAGAYISIPDQKICCLWFPGVGAVPPDFLRAFNYSGKIETVPDQFGQDHKCYRWDGDGFVYWTDVATGDDIQFRDGPGDTFWNFGNLTPGNQSASIFNLPPNCGGSCPSSISSDPSLLQKTIMF*

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