NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0113998_111822

Scaffold Ga0113998_111822


Overview

Basic Information
Taxon OID3300008734 Open in IMG/M
Scaffold IDGa0113998_111822 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 765013792 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2526
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085820Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0113998_1118222F085820N/AMKSSFLTLFAMLFLATTFFSCETNEPAPRATWGEIVNPIKAFMYPRDLEVSEDQYDSRRWHILVVPDSTKSSFAPTSKSTPAEVARYKELSRLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTYKQIFDCHFKCGDRSIFAKPLGEVVEADYLWLPGIDEFGLVTPPNPDHLKQRIVLRLADGTEIEKELSEKGKK*
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