Scaffold Ga0103688_1021022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103688_1021022

Scaffold Ga0103688_1021022

Overview

Basic Information
Taxon OID	3300008788 Open in IMG/M
Scaffold ID	Ga0103688_1021022 Open in IMG/M
Source Dataset Name	Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Plume GD6i
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	538
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent In Guaymas Basin In The Gulf Of California → Microbial Communities Of Hydrothermal Vent Plumes From The Guaymas Basin In The Gulf Of California

Source Dataset Sampling Location
Location Name	Guaymas Basin in the Gulf of California
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065401	Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103688_10210221	F065401	N/A	RDWDEALAPSKMVVDSVSLNSWLHMWARMCKGAAGIDDFPIWVQLIPRVIFKVICSREGGDVISRESLKNFYKNFTGLRVETRQKVATDGYRSMSANGDYELDYSSYKLLFSNFLLGRTIYGPGKYVFGAFDNRDMEEKYKIVYE*

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