Scaffold Ga0103378_1002087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103378_1002087

Scaffold Ga0103378_1002087

Overview

Basic Information
Taxon OID	3300008811 Open in IMG/M
Scaffold ID	Ga0103378_1002087 Open in IMG/M
Source Dataset Name	Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_rapeseed oil diet
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Aarhus University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	531
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006460	Metagenome / Metatranscriptome	372	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103378_10020871	F006460	N/A	MEPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGL

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