NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103389_100684

Scaffold Ga0103389_100684


Overview

Basic Information
Taxon OID3300008876 Open in IMG/M
Scaffold IDGa0103389_100684 Open in IMG/M
Source Dataset NameMicrobial communities of Wadden Sea tidal flat in Germany - 1650 earlyLowTide
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterBielefeld University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Tidal Flat → Microbial Communities Of Wadden Sea Tidal Flat In Germany

Source Dataset Sampling Location
Location NameWadden Sea, Germany
CoordinatesLat. (o)53.73Long. (o)7.67Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054544Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0103389_1006842F054544N/AITQVYDNGTVKLVKVTGNGGAVYQTWNIRNIEPRKA*
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