NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103734_1010579

Scaffold Ga0103734_1010579


Overview

Basic Information
Taxon OID3300008931 Open in IMG/M
Scaffold IDGa0103734_1010579 Open in IMG/M
Source Dataset NameEukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1C
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1246
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica

Source Dataset Sampling Location
Location NameIce edge, McMurdo Sound, Antarctica
CoordinatesLat. (o)-77.36Long. (o)164.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080841Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0103734_10105791F080841N/AMVNFMCVLSALCFIVGNALTISYYVKEFQRSHFDYEAYTQLDPGYIQVEWGFRALNRPKYMAAGTINTLAWFFLMYPVIHLAWILSQRGTKWISLHVGIAVLVLTGSLTEWISHVLYIGASMSSELLAREFNLDNWITSTSGDEIGWRTLEITHIVTYGFISTIGAIEWLFLSFVMALIHISVKRWRRDVDSTTFGACWNALGLFIALMCILEFIAEVLRLDGFITFGKIAFWYSGVNRLILIPTWLILLGMRLPYAAVKLNQQTHMIEQQEPLTNGE*
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