Scaffold Ga0103738_1013041

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103738_1013041

Scaffold Ga0103738_1013041

Overview

Basic Information
Taxon OID	3300008935 Open in IMG/M
Scaffold ID	Ga0103738_1013041 Open in IMG/M
Source Dataset Name	Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3A
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1038
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica

Source Dataset Sampling Location
Location Name	Ice edge, McMurdo Sound, Antarctica
Coordinates	Lat. (^o)	-77.36	Long. (^o)	164.28	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003808	Metatranscriptome	467	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103738_10130411	F003808	GGAG	MRVAVENPGLSLFCFSVYTENTGSTKPSHELQLLQGQFARMSGIFSCAEYAVYSDVVAPLGGDDMTVQVHDVKSDWHLMKRKSAGTWVNTGMFVQVWSAIRDAGHYQKHNWVIKADADAVFFPHKLMNLLQPVAVPAEGLYMENCKYVSWGYFGNLEVFSKQAFTSLVDNVENCYNSLPWKVGVLEGKYGPMGEDLFAQKCMDQIGVGKQEMFDLTTDGACESDRPQGQEKNKKYIPNCAGTSTPSIHPFKKPAAYFKCMDEAASALP*

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