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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008937 Open in IMG/M |
| Scaffold ID | Ga0103740_1000130 Open in IMG/M |
| Source Dataset Name | Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3C |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3639 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ice edge, McMurdo Sound, Antarctica | |||||||
| Coordinates | Lat. (o) | -77.36 | Long. (o) | 164.28 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002322 | Metagenome / Metatranscriptome | 571 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0103740_10001301 | F002322 | AGGAG | MADRLPYSKNVEKHILECIQGGIPIRQMIASMGHLQGAPKSLSTMYKIYGSFMEMERTKINGAVGKRVIDQALYGDVQDGITWKSQELFLRSKGGWSPQNTVTEVEQEIDPEVDEAATDILMNLLGFNEDDNES* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |