NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103741_1040338

Scaffold Ga0103741_1040338


Overview

Basic Information
Taxon OID3300008938 Open in IMG/M
Scaffold IDGa0103741_1040338 Open in IMG/M
Source Dataset NameEukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 4A
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica

Source Dataset Sampling Location
Location NameIce edge, McMurdo Sound, Antarctica
CoordinatesLat. (o)-77.36Long. (o)164.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062808Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0103741_10403382F062808N/ATQPYNIRPPPYLINIWGILALNLFWCTKEQCPYAPTVAVRDIYKLEFDIFQLPTSFPFGSSCGKEIPLIQSLGMDAHTWPCQEVPNFWAGFYIFSTVIFMIHACLGWKKVVPALGIPMGHHKCVNIIGYMIFIVLGAIYISFPAYVMSTPKRWCGWEAESENRLNEPSSACQLIGA*
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