NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115651_1117462

Scaffold Ga0115651_1117462


Overview

Basic Information
Taxon OID3300008952 Open in IMG/M
Scaffold IDGa0115651_1117462 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1940
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080925Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0115651_11174622F080925N/AMPEVQDIKHTGPVLKHKQSKTEILPRLSSRICVAGPSGVGKGVLVMQLLTNPEFYRGCFERIYYFSQSAKVDSNLLGLRTYCEKELGQTEECLFSEFDEGFLRDLLNRQLKITHHLKQRAANGGPKKAMGVCVVVDDFIDMPSVVRKANGVLSSIAIRGRHGFVTCFYMTQKYRALGTEIRTNFNALMFFRQRSRFDLEAFLEENSAIIPREQLYQMYVKATSRDHGFLYCDLMQSDPAKMFYASFNARLVPRDASLEEEDE*
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