NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104241_1000369

Scaffold Ga0104241_1000369


Overview

Basic Information
Taxon OID3300008953 Open in IMG/M
Scaffold IDGa0104241_1000369 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3686
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003965Metagenome / Metatranscriptome459Y
F005348Metagenome / Metatranscriptome403Y
F012455Metagenome / Metatranscriptome280Y
F023275Metagenome / Metatranscriptome210Y
F034574Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0104241_100036912F005348AGGMINSVMAFDCDECNGQGLIFWGNDLDYDVEKCECKDFTLGTLFTTKEAN*
Ga0104241_10003692F023275GAGVLTTTAQPAINMGILDNLEYSMADNDGMPNKTVEETIQEMTEDPEYDKLMERLKYMEDNGI*
Ga0104241_10003693F034574GAGGMKITYTIWQGSLNKGTLTATTMKEIISTMKDLNEGNTSLKFEYMVHKIEQVA*
Ga0104241_10003697F003965AGGAMNSNVIIQVCKTHVPNKSAISDVNDEQFTFCEVCESNIERWYNDTDPERLPMWTSWKVSK
Ga0104241_10003698F012455N/AMLKEIKNKIIRIQELRRSNAATAIPSKKNYSRKIKHKNKLK*
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