NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104241_1000383

Scaffold Ga0104241_1000383


Overview

Basic Information
Taxon OID3300008953 Open in IMG/M
Scaffold IDGa0104241_1000383 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3599
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012108Metagenome / Metatranscriptome283Y
F037567Metagenome / Metatranscriptome167N
F059898Metagenome / Metatranscriptome133Y
F088817Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0104241_10003831F012108GGAGGMIKVEMSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRHVVTITGGMNLNNRIPCIKAIRLHTGWGLKEAKDWTDFLVGGWKYDKWHPAPHGTKQSITLKTPEVAEGLLRDLVGLGCEGYISHDIKPCP*
Ga0104241_10003834F088817GGAGMNGYQLLAQFEQQIKEALLVPNSWLPENFQDHRTDSVSLADLEKKCHSMEIGETEHQQEKREKDRRIELYRSMIDNGQEITY*
Ga0104241_10003838F059898AGGAMVNDRDKAMILILSFFRNKMAAVNKHNVSQVKELISTHEIAVSELVDRYVKFVYENS*
Ga0104241_10003839F037567GAGGMEWLSFFGYRRPINGQKVYYFGPDIGVWQGRYEIHRDDPVSEHILICEESPGIVDRMDAPWWMPYEGQKKPQRPETDYPKDYPHG*
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