NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0104241_1001038

Scaffold Ga0104241_1001038


Overview

Basic Information
Taxon OID3300008953 Open in IMG/M
Scaffold IDGa0104241_1001038 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2197
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002598Metagenome / Metatranscriptome544Y
F006744Metagenome / Metatranscriptome365Y
F015208Metagenome / Metatranscriptome256Y
F029434Metagenome / Metatranscriptome188Y
F074868Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0104241_10010381F074868AGGTGGMTTLNKTNIGLALGISGALENRILHDWNNGGCKSTYGLSVWQRKVLLKVLIGENPKCFCVNCLEVK*
Ga0104241_10010383F029434AGGMKKYTFGVWLDIDAEDEDMALSMFDDVTKNLWVKDSYCFEWKEVE*
Ga0104241_10010385F002598AGAAGGMATKCYTIENLLVGKNYRSISRHFSGEIVSAEPRPEIWYGEKTEAFLIEVNAGGLRNKFATIAVKVGE*
Ga0104241_10010386F000447GAGMGYIEFARINEEGVSWVDLSKATPEELLEIEIGLFQEGAI*
Ga0104241_10010387F006744AGGMNLEEFKKHVLDQREASKAQALSVLSATIAKSNERKEN*
Ga0104241_10010389F015208GGAMYKITVTYDEAKSPNFAFEYSDELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.