NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104241_1001384

Scaffold Ga0104241_1001384


Overview

Basic Information
Taxon OID3300008953 Open in IMG/M
Scaffold IDGa0104241_1001384 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1878
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y
F062447Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0104241_10013841F034827N/AMKYTITSRDKEAMVEFNSLKEGDVFSFFDPESVQKGNHSIYMKIKNGSNNIVDLDDGKVFGFSDKKRNTLNGPDEQQG
Ga0104241_10013842F048123GGAGMKPRYDFNKGKLISYDGEIIEFAETKAIDKYADQVQEIMALFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKTNISKIAERMYNFRPF*
Ga0104241_10013845F032536GGAMNERQTLEELMRSFRFHKNPILNWFFGEVNYYSHIFLNGKFKIKNTFQKLIRGYSDSDCWNLPQSTAKFMLPIIKHLRKNYHSLANRHHLIIDNKIVPYVAEENVFEFNKTLGCYTDKTTGLGISLDQKEYEYVLDEIIFALQMIVDEENPKISLEELYEVYPKGFDPIKDNKMFLTKESNDNYLVEFEAENDIKPDYTKLNKAYERQRNGLLLLGLYFKDLWD*
Ga0104241_10013846F062447N/AVKGVVPSAQIINKTSTDKFPADAVTIRMYNLNIKNPTATAYFYGKEAQYTNWGGNYTMAETKLMVTFDKDNQGYSFNGAVKSFSLQDIKEVLDSVRETINKI*
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