NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104241_1001518

Scaffold Ga0104241_1001518


Overview

Basic Information
Taxon OID3300008953 Open in IMG/M
Scaffold IDGa0104241_1001518 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1795
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004431Metagenome / Metatranscriptome438Y
F009143Metagenome / Metatranscriptome322Y
F085708Metagenome / Metatranscriptome111Y
F096663Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0104241_10015181F096663N/AMEKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAA
Ga0104241_10015183F085708GAGMTTNRILTTLVQLAIGIPALYMARLMWREVLADFREWDKSH*
Ga0104241_10015185F009143AGGMMTKWDTIQADVADAYIYIDEEEAYNKALEEGNIGLLDINDFDEDELSKSLTLDWND*
Ga0104241_10015186F004431AGAAGMTITYSLWDGSQLLSANMTASSADEMNKVVADLQKVSKNVVAHMRKVTQN*
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