NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104259_1000302

Scaffold Ga0104259_1000302


Overview

Basic Information
Taxon OID3300008958 Open in IMG/M
Scaffold IDGa0104259_1000302 Open in IMG/M
Source Dataset NameMarine microbial communities from eastern North Pacific Ocean - P1 particle-associated
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2457
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Nameeastern North Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087251Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0104259_10003021F087251N/ARSTFTIMKFAFAVTGALAADMLEDVTTLLSTHAIEDDSIMLSVRGAAMQLAADNNKAALSDVARAQDPRRASELLQEFALNTAESGTGLDADTREKLIGIRDILTNETYVSLEQSHRHDQDLLSKHARAINECGEKHIRHLQQDIEGQEVQLVRDTEDAMYKCRGLPEHALAVLQSEPAAQRFWSNWTGVNDPKYDDPEFMDCQEAHVDMYAKCDALDDFIRGLPQPNCQPPIGSTEMEVPTCDGQPSGVDSDLFDWFSNMKSNAEFYQTTWRGLKRQCDASRVYYKEICLTECAQKQRLFETAFCAYRQGLHATCREYQGCHVLNEEQYMDLIKSVQYNADSRKIDWKAIHKIECYINVLISTESNEIRAKDLLNCEAGNLNTIETILTGFNETNYLSLIIPEINVSCWDLEIPQFIDFKECDMSSVQQHPCTEDWTNRYNGLVAPADCTECAPIPDEFQYHMDQESHTGAKSV*
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