Scaffold Ga0104259_1028576

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104259_1028576

Scaffold Ga0104259_1028576

Overview

Basic Information
Taxon OID	3300008958 Open in IMG/M
Scaffold ID	Ga0104259_1028576 Open in IMG/M
Source Dataset Name	Marine microbial communities from eastern North Pacific Ocean - P1 particle-associated
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	577
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Clarireedia → Clarireedia homoeocarpa	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Name	eastern North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038968	Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104259_10285761	F038968	N/A	VSRTTNGLGESVTFSETSGFFTGAGETFKFSVFVDWLGDPVHVGVSSDDLVVWIDHDDFVVLVGGIFSGPVTVDNSKVSDGFTRSFFSDRLNSSLKFKLVNSLVDWFTVGGTLWRESLSATSSNSDSVDYVTLLGFVAHKSGFFWPGWSNGSVDSWKLSKMPRSESEDVFHDITLLLSPKFILVLVGTHVF

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