Scaffold Ga0104242_1001189

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104242_1001189

Scaffold Ga0104242_1001189

Overview

Basic Information
Taxon OID	3300008962 Open in IMG/M
Scaffold ID	Ga0104242_1001189 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5347
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	Lake Lanier in Georgia, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041150	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10011897	F041150	GGAG	MGMGSFAVGSFVIEYKDLKKICPDEIKAIEKSKYFKDVGWGIFGRWLGWDDPDMVNDALYDAVSNDKSNPVIRLGLSEDQIVEDIFQEYEELVVALKNSFNKNTGLTLYFDSYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGEKFKDIITERKWTQYG*

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