NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104242_1001916

Scaffold Ga0104242_1001916


Overview

Basic Information
Taxon OID3300008962 Open in IMG/M
Scaffold IDGa0104242_1001916 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4124
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001781Metagenome / Metatranscriptome635Y
F005504Metagenome / Metatranscriptome398Y
F021288Metagenome / Metatranscriptome219Y
F023344Metagenome / Metatranscriptome210Y
F047059Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0104242_10019161F005504GGTGGMEIVRGEVKELLDYENRCYACQSFDTLSYCDNDCGEFCSECNQGSWQDEEAMAKCQTHSVLLESREKAEA*
Ga0104242_10019162F023344AGGCGGMESFTDTVGEHILGAIQVDIEQHLFEQWNDKNLDEGSEYAEWRFMEFAPDNLKQSYNEYYGYKEGDEFYLC*
Ga0104242_10019163F021288GAGMLGYSKEDLDNMIHGIECADLIIDSDKNPAIHNYLVTANEFLQGLWAEGYFD*
Ga0104242_10019164F047059AGAAGGMTNSFVEYMKLHLISLNQDLEDARNNEPLNEDEYWESDSFYMGAIDAVEHLLSVADDMMSS*
Ga0104242_10019166F001781AGGAMRPDDKDKLNKCLEILDSTDLGLSLVWLWTWSTIGNILDDDTWQAEVTMDEMWDHLCEAVSAGQGFSLEWGAEQHQQEVLEWMLDREYIVDPEDIEEEEKE*
Ga0104242_10019167F000441AGGAGMEMTNPYIYSKLAMAQKLLWGGSETENIEAHNIISKLIRELDEGTMYA*
Ga0104242_10019169F000852AGGAMTTKREYLKQQGITVGARGRFSGAAKQALQEAVQKGVTFTAEKPVNKAN*
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