Scaffold Ga0102960_1006918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102960_1006918

Scaffold Ga0102960_1006918

Overview

Basic Information
Taxon OID	3300009000 Open in IMG/M
Scaffold ID	Ga0102960_1006918 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4331
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4972	Long. (^o)	-122.1293	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032672	Metagenome / Metatranscriptome	179	N
F065805	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_10069183	F065805	N/A	MTDKEQIQHLIDKNNKLEAELISLKTKATVWFEDMANLRNTMLLRNNELKQYKDVHVNWELKKKIILFLQKTQSLEAYDAMTPNQIAHRAATFIEKILGSKQPPLLAITNEVQVTTREHD
Ga0102960_10069186	F032672	AGGCGG	MANVVISNFINERWVDRIYQTFSKTPYVLKPDGTIKNCKIKKVKSKYYLTSTGKWFNNSGLRIDEPAGLDIKTERSKFQAELKQADIDAKFNKLKQTIRGN*

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