Scaffold Ga0102963

Basic Information
Taxon OID	3300009001 Open in IMG/M
Scaffold ID	Ga0102963_1002818 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7674
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7674

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4973	Long. (^o)	-122.1295	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4973

Long. (^o)

-122.1295

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015477	Metagenome / Metatranscriptome	254	Y
F025294	Metagenome / Metatranscriptome	202	Y
F052627	Metagenome / Metatranscriptome	142	Y
F071194	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_100281811	F025294	N/A	MKMDNASTDTAEHTEVNSAPVTDSANPVDNVEQSTATDTKSDNNTTPEVEVRDGKTFVNGIRMYSRDDTNKIAASAKHEVEKNILTQLNVDSIDQVKQVVSTLQEANPSEGESLNIESLRDAVKKREATVEELKSQVTSLKQDLLLKDHMGKLEAAMPTNWTPSQRQSVVKLMKADGMLAVEGDTFAIKAGDDYLTTDGETPDYTRAVELVGKEVLGLSMGKKGVDLQYGDTSGETSKQQVKPVDQNKLNTDANYRTAYMHIRKYRPNVARESITNNMVMKEMESMRNK*
Ga0102963_100281812	F071194	GGAG	LASKFNYLEFIQQTHPLYSKYYDDWKLAVNSYYGGVSYREGKYLKAYDSDYSTPSEVINTYDVDEYGNQIAKHRTSVERVNSLSQAETGLQYASNFYQEKLQNVPVFPYTRLYCQEYSAILFRSPPSRELPETPEIDSFIEDVDGEGNSINEFMSMVDVFTTVFGIVWISCLKPSEAEYARWRMHKPTEVYNWAYTYNASGDLVLNKILIKVAEEPEFEVYQYITPEEIHTIFMPTGDDEDIADQMPEDAEYLEDDEGKGFYRIVQPNELGYIPVRPVYQSNKIQNGVGHTPIFDIAQIQRSVYSDMGEIYSAVSYGAHPVNLVDEETLNRNDNSVGAEPGSIIITQASLNGQPNYVYEFVAPPLDSITEIREMMDQKIEKMNQVAMIRSDELIKASRSGVQIEMYDSKLEAFIRKKATSMEQAEFNMWKIWFDWQDQDMPEDLAISYNRLYSQKGVENEIKEMNTLLDAYERYSSVFLEGVETYEAPEYSTQAEAEAEAQRLGGSGFHSHEEEDGTTVYMPFQTHEELEMRMEMQKGVDSEEFPAFRQNLKEKIQKRLNQIVDSTYSDNSI*
Ga0102963_10028185	F015477	GAG	MEIAKAQNEIRCARADVEKASNRMAFVLSAVHNLKDRLDKDIQE*
Ga0102963_10028188	F052627	AGG	MSKRTDLISQITTNIAAHTSFAINEELPFLSGGIPLYEKNMRTIYVDEQQIAVDELYDTLDGQAVNQTTTTINAYLSVDAKEQLTDIDTVVANLLVARNGIANTIESTSDYETDIVNDVITYTFEYNFITV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102963_1002818

Overview

Ecosystem & Geography

Associated Families

Sequences