NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102963_1016422

Scaffold Ga0102963_1016422


Overview

Basic Information
Taxon OID3300009001 Open in IMG/M
Scaffold IDGa0102963_1016422 Open in IMG/M
Source Dataset NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3132
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4973Long. (o)-122.1295Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F048249Metagenome148N
F055727Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0102963_10164221F018534N/AMALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGATVTIEYRHQINSSTGECSTVAYLVAYDSNGNRVSLRNQTYGCFDDEEKQFHQWFATKIAGAVELDARRRRDLSDGIDM
Ga0102963_10164222F048249GGAMKTSIFNTRIIRKGSKVLYRGSWGRDGQRIAEVIAIEQTQGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVAK*
Ga0102963_10164224F055727N/AMQYNHFIEFSVSEMVDAYTYFTCIRDYEGCRLVAAAFDSNTRIDLKGFFND*
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